devtools::build() output obscured the returned archive path.modelToUnconstrained(), modelFromUnconstrained(), and modelLogJacobian() so the API states its mathematical purpose directly.modelToWorking(), modelFromWorking(), and modelWorkingLogJacobian() names rather than retaining compatibility aliases.basics, model-comparison, uncertainty, and extending, while removing the redundant simple_P_fit vignette..gitignore and .Rbuildignore rules for transient LaTeX, knitr, and rmarkdown files created while rendering vignettes.fit() API.fit() model-descriptor API rather than deprecated distribution-specific fitting wrappers.psData methods and operations into R/psData-methods.R without changing their interfaces or calculations.psFit fitted, log-likelihood, print, and summary methods into R/psFit-methods.R.cubature::hcubature() integration over model-supplied natural-scale bounds.devtools::test() so the package and test helpers are loaded before the full suite runs.cubature as a package import for core two-dimensional numerical integration and kept Laplace and importance as secondary existing capabilities.stats::setNames roxygen import required by the generic numerical engine.Repaired the Stage 9.1 version formatter, which had recycled the build component and produced an invalid six-part version; build 001 remains consumed by that attempted stage.
Audited the Bayesian architecture for external model extensibility and defined the minimum public model contract needed for fitPS-owned posterior engines.
Identified model-specific posterior fitting dispatch, scalar prior assumptions, and built-in parameter transformations as the main barriers to third-party Bayesian models.
Recorded a staged implementation path beginning with public prior, Bayesian-control, and parameter-transformation methods, followed by generic MCMC proof models.
No installed package behaviour changed; package validation was intentionally skipped because this stage changes only development audit documentation.
mu and sigma, with model-specific mathematics and S3 registration confined to test helper code.R/; Stage 8.4 therefore tests the Stage 8.3 public API without extending fitPS internals.psModel() constructor and exported the minimal S3 generics needed for third-party model extensions.modelMleControl() overrides for more demanding models.fit() entry point for built-in zeta, zero-inflated zeta, and logarithmic model objects.fit() method dispatch so its default method vector is resolved to the scalar mle choice before delegation to model-specific fitters.vapply() do not cause a false failure when the fitted model identifiers are otherwise identical.psFit objects retain their originating model descriptor while preserving the established character model identifier.git add failures and leaving new files untracked.plotPosterior() for posterior-density plots from Bayesian psFit objects.shape and pi.plot.psFit() fitted-probability plots unchanged for backward compatibility.psFit objects rather than long MCMC runs.R CMD check NOTE under dev/.1.0.5.xxx build convention, including one consumed build number per attempt.dev/.plotPosterior() API for posterior parameter-density plots while preserving plot.psFit() for fitted probabilities.1.0.5.xxx build convention..Rnw files to R Markdown .Rmd files.rmarkdown to Suggests for the R Markdown vignette builder.shape consistently refers to the standard zeta parameter alpha with shape > 1.fitDist() and fitZIDist() help text.log(shape - 1), giving support only on valid standard-shape values.shape means the standard zeta parameter alpha with shape > 1.shape - 1.tests/testthat because they intentionally fail before the Stage 2.2 refactor.dev/ so Stage 2.2 can reinstate them with the implementation repair..gitignore to exclude the fitPS built-package path marker produced by stage runners.testthat infrastructure for core psData and psFit workflows.logLik.psFit().fitDist() prior argument and adding required stats imports.fitDist() and fitZIDist() while preserving backward-compatible shape aliases.pi component.